Posted in python

Python workflow for omics data analysis

Bioinformatic Python codes for volcano plot, DEG and heatmap analysis

Thank you all for the great interest in my blog. For the year end, I have decided to compile the blog posts that I have made for this year so we can revise what we have learnt before starting the next year with new content. If you have followed my posts, a lot of emphasis has been placed in data analysis of omics data, including volcano plot, DEG identification and heatmap analysis. I have thus re-written some of these posts in Medium, curating the codes so that readers can also implement them easily. Furthermore, a concrete example dataset is provided in GitHub to bring context into the codes used!

For Python codes on volcano plots, please click here.

For Python codes on DEGs, please click here.

For Python codes on clustergrams and heatmaps, please click here.

All of the above visualisation tools are important before doing any downstream analysis, including pathway enrichment analysis, interaction maps, gene network etc., which I will be covering more next year!

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